Mangrove endophyte promotes reforestation tree (Acacia polyphylla) growth

ABSTRACT Mangroves are ecosystems located in the transition zone between land and sea that serve as a potential source of biotechnological resources. Brazil's extensive coast contains one of the largest mangrove forests in the world (encompassing an area of 25,000 km2 along all the coast). Endophytic bacteria were isolated from the following three plant species: Rhizophora mangle, Laguncularia racemosa and Avicennia nitida. A large number of these isolates, 115 in total, were evaluated for their ability to fix nitrogen and solubilize phosphorous. Bacteria that tested positive for both of these tests were examined further to determine their level of indole acetic acid production. Two strains with high indole acetic acid production were selected for use as inoculants for reforestation trees, and then the growth of the plants was evaluated under field conditions. The bacterium Pseudomonas fluorescens (strain MCR1.10) had a low phosphorus solubilization index, while this index was higher in the other strain used, Enterobacter sp. (strain MCR1.48). We used the reforestation tree Acacia polyphylla. The results indicate that inoculation with the MCR1.48 endophyte increases Acacia polyphylla shoot dry mass, demonstrating that this strain effectively promotes the plant's growth and fitness, which can be used in the seedling production of this tree. Therefore, we successfully screened the biotechnological potential of endophyte isolates from mangrove, with a focus on plant growth promotion, and selected a strain able to provide limited nutrients and hormones for in plant growth.

Evaluation of bacterial diversity recovered from petroleum samples using different physical matrices

ABSTRACT Unraveling the microbial diversity and its complexity in petroleum reservoir environments has been a challenge throughout the years. Despite the techniques developed in order to improve methodologies involving DNA extraction from crude oil, microbial enrichments using different culture conditions can be applied as a way to increase the recovery of DNA from environments with low cellular density for further microbiological analyses. This work aimed at the evaluation of different matrices (arenite, shale and polyurethane foam) as support materials for microbial growth and biofilm formation in enrichments using a biodegraded petroleum sample as inoculum in sulfate reducing condition. Subsequent microbial diversity characterization was carried out using Scanning Electronic Microscopy (SEM), Denaturing Gradient Gel Electrophoresis (DGGE) and 16S rRNA gene libraries in order to compare the microbial biomass yield, DNA recovery efficiency and diversity among the enrichments. The DNA from microbial communities in petroleum enrichments was purified according to a protocol established in this work and used for 16S rRNA amplification with bacterial generic primers. The PCR products were cloned, and positive clones were screened by Amplified Ribosomal DNA Restriction Analysis (ARDRA). Sequencing and phylogenetic analyses revealed that the bacterial community was mostly represented by members of the genera Petrotoga, Bacillus, Pseudomonas, Geobacillus and Rahnella. The use of different support materials in the enrichments yielded an increase in microbial biomass and biofilm formation, indicating that these materials may be employed for efficient biomass recovery from petroleum reservoir samples. Nonetheless, the most diverse microbiota were recovered from the biodegraded petroleum sample using polyurethane foam cubes as support material.

Avaliação de bactérias endofíticas para o controle biológico da mancha foliar de Exserohilum turcicum em milho / Assessing of endophytic bacteria for biological control of northern corn leaf blight (Exserohilum turcicum)

A eficácia de nove isolados de bactérias endofíticas foi avaliada no biocontrole da mancha foliar de Exserohilum turcicum, pela microbiolização das sementes e da parte aérea do milho híbrido AS-1548 (72 e 24 horas antes e no mesmo dia da inoculação do patógeno) em condições de casa de vegetação. Verificou-se que Bacillus subtilis 0G, Bacillus lentimorbus, Streptomyces sp. e Bacillus agaradhaerens se destacaram dos demais, quando aplicados na parte aérea, em todos os intervalos testados, com um controle na ordem de 42 a 61%. Quando as bactérias foram aplicadas nas sementes, Bacillus lentimorbus, Streptomyces sp., Ewingella americana e Xanthomonas axonopodis foram os mais eficientes, com um controle entre 37 e 59%.(AU)

The efficacy of nine endophytic bacterial strains was evaluated on biocontrol of northern corn leaf blight (Exserohilum turcicum), by microbiolization of seeds and aerial parts of maize, hybrid AS-1548 (72 and 24 hours before and at same day of the pathogen inoculation) in greenhouse conditions. It was found that Bacillus subtilis 0G, Bacillus lentimorbus, Streptomyces sp. and Bacillus agaradhaerens highlighted from the others, when applied on aerial parts of maize, in all intervals tested, presenting control in order of 42 to 61%. When the bacteria were applied on seeds, Bacillus lentimorbus, Streptomyces sp., Ewingella americana and Xanthomonas axonopodis showed more efficiency, presenting control between 37 and 59%.(AU)

UV-B Resistant Yeast Inhabit the Phyllosphere of Strawberry.

The increase on the worldwide influx of solar ultraviolet radiation (UV-B) has inflicted a considerable challenge, due to its deleterious effects to live beings and pose a special threat to phyllosphere communities. However, UV-B influence on epiphytic yeasts associated with agricultural crops remains limited. Main aim of the present study was to determine the effect of ultraviolet-B radiation on the epiphytic yeast populations associated with strawberry under field conditions. Thus, strawberries (Fragaria x ananassa Duchesne cv. Oso Grande) were grown under three different treatments: a) environmental UV-B, b) enhanced UV-B and c) decreased UV-B; thereafter, their yeast epiphytic populations were analyzed by T-RFLP prior to yeast isolation, identification and in vitro test for the sensitivity against UV-B. Our results demonstrated that UV-B radiation did not significantly affect the strawberry epiphytic yeast populations. However, isolates directly exposed to radiation, generally revealed morphological abnormalities and a diminishing value in the percentage of survival, although they remained constant after 240 min of exposure. The increase in UV-B radiation was not sufficient to affect the dynamics and composition of epiphytic yeast communities from strawberry, there was a clear morphotype shift towards the selection of pigmented isolates.

Effects of different osmolarities on bacterial biofilm formation

Biofilm formation depends on several factors. The influence of different osmolarities on bacterial biofilm formation was studied. Two strains (Enterobacter sp. and Stenotrophomonas sp.) exhibited the most remarkable alterations. Biofilm formation is an important trait and its use has been associated to the protection of organisms against environmental stresses.

Screening of endoglucanase-producing bacteria in the saline rhizosphere of Rhizophora mangle

In screening the culturable endoglucanase-producing bacteria in the rhizosphere of Rhizophora mangle, we found a prevalence of genera Bacillus and Paenibacillus. These bacteria revealed different activities in endoglucolysis and biofilm formation when exposed to specific NaCl concentrations, indicating modulated growth under natural variations in mangrove salinity.

Biological control of phytopathogenic fungi by endophytic actinomycetes isolated from maize (Zea mays L.)

This work aimed a survey on the biodiversity of maize endophytic actinomycete, and an evaluation of their potential to control the phytopathogenic fungi. From several regions of São Paulo state, 40 strains were isolated from the healthy maize plants. The identification of these strains, based on morphological properties and fatty acid methyl ester (FAME) profile showed that most of them belonged to the Streptomyces genus. These isolates were first screened for the growth inhibition of phytopathogenic fungi and results showed that all the isolate were able to inhibit the development of at least one tested pathogen. Two selected isolates were then evaluated for the control of P. aphanidermatum in cucumber (Cucumis sativa L.) under greenhouse conditions. Isolate 16R3B was able to reduce up to 71% damping-off incidence whereas isolate 14F1D/2 reduced the disease incidence by 36%. Damping- off control in cucumber, mainly for the isolate 16R3B, suggested for its use in greenhouse cucumber producing fields and to be tested in field trials.

Endo-and exoglucanase activities in bacteria from mangrove sediment

The mangrove ecosystem is an unexplored source for biotechnological applications. In this unique environment, endemic bacteria have the ability to thrive in the harsh environmental conditions (salinity and anaerobiosis), and act in the degradation of organic matter, promoting nutrient cycles. Thus, this study aimed to assess the cellulolytic activities of bacterial groups present in the sediment from a mangrove located in Ilha do Cardoso (SP, Brazil). To optimize the isolation of cellulolytic bacteria, enrichments in two types of culture media (tryptone broth and minimum salt medium), both supplemented with 5% NaCl and 1% of cellulose, were performed. Tests conducted with the obtained colonies showed a higher occurrence of endoglycolytic activity (33 isolates) than exoglycolytic (19 isolates), and the degradation activity was shown to be modulated by the presence of NaCl. The isolated bacteria were clustered by BOX-PCR and further classified on the basis of partial 16S rRNA sequences as Alphaproteobacteria, Gammaproteobacteria, Actinobacteria, Firmicutes or Bacteroidetes. Therefore, this study highlights the importance of studies focusing on the endemic species found in mangroves to exploit them as novel biotechnological tools for the degradation of cellulose.

Changes in hyphal morphology due to chitosan treatment in some fungal species

In this work, changes in the hyphal morphology due to chitosan treatment in some fungal species were studied. Scanning electron microscope (SEM) observations revealed that chitosans with molar fraction of acetyl groups (F A 0.16 and 0.18) and degree of polymerization (DP 1,089 and 1,242) had a direct effect on the morphology of the chitosan-treated fungi, reflecting its potential for causing a delay in the growth of Alternaria alternata (500 µg × mL-1), Botrytis cinerea (1,000 µg × mL-1), Penicillium expansum (1,000 µg × mL-1) and Rhizopus stolonifer (500 µg × mL-1). Mycelial aggregation and structural changes such as excessive branching, swelling of the cell wall and hyphae size reduction were observed in the micrographs.

Interspecific variation of the bacterial community structure in the phyllosphere of the three major plant components of mangrove forests

Mangrove forests encompass a group of trees species that inhabit the intertidal zones, where soil is characterized by the high salinity and low availability of oxygen. The phyllosphere of these trees represent the habitat provided on the aboveground parts of plants, supporting in a global scale, a large and complex microbial community. The structure of phyllosphere communities reflects immigration, survival and growth of microbial colonizers, which is influenced by numerous environmental factors in addition to leaf physical and chemical properties. Here, a combination of culture-base methods with PCR-DGGE was applied to test whether local or plant specific factors shape the bacterial community of the phyllosphere from three plant species (Avicenia shaueriana, Laguncularia racemosa and Rhizophora mangle), found in two mangroves. The number of bacteria in the phyllosphere of these plants varied between 3.62 x 10(4) in A. schaeriana and 6.26 x 10³ in R. mangle. The results obtained by PCR-DGGE and isolation approaches were congruent and demonstrated that each plant species harbor specific bacterial communities in their leaves surfaces. Moreover, the ordination of environmental factors (mangrove and plant species), by redundancy analysis (RDA), also indicated that the selection exerted by plant species is higher than mangrove location on bacterial communities at phyllosphere.

Isolation and characterization of carbendazim degrading trichoderma harzianum rifai mutants

Mutants of Trichoderma harzianum Rifai, obtained after ultraviolet (UV) light exposure, showed high resistant to the fungicide benomyl. A mutant (2B6)was capable of degrading carbendazim, other fungicide of the benzimidazole fungicide. This mutant degraded 41.5% of the molecule within five days. This and others mutants (2B1 and 2B2) presented variation in size and frequency of uni-nucleated and/ or bi-nucleated spores compared to the wild type. Four primers generated RAPDs patterns that allowed the mutant to be differentiated from the wild-type. It is concluded that using UV mutagenization, it is feasible to obtain strains of T. harzianum with improved pesticide degradation ability.

Selection of microorganisms degrading S-Metolachlor herbicide

The aim of this work was to study herbicide degradation through selected microorganisms from humus and soil subjected to different plantation systems. The following bacterial species were identified: Klebsiella pneumoniae pneumoniae GC s.B strain 1, Pseudomonas alcaligenes, Enterobacter aerogenes GC s.A and Klebsiella pneumoniae pneumoniae GC s.B strain 2. Growth studies yet suggested the possibility of a very long lag phase. Although, culture with the herbicide presented biofilm formation and there were color changes in the herbicide that could have interfered with the espectrophotometry readings. After 5 days of incubation at 35°C, the difference in the concentration of herbicide was 14.42 percent on average and after 10 days, 35.01 percent.

Os herbicidas representam 65 por cento do consumo geral, sendo que o S-Metolachlor é um dos mais utilizados e está trazendo preocupações ambientais. Objetivamos detectar a degradação do S-Metolachlor por microorganismos de solos sob plantio. Foram identificadas as espécies bacterianas: Klebsiella pneumoniae pneumoniae GC s.B linhagem 1, Pseudomonas alcaligenes, Enterobacter aerogenes GC s.A e Klebsiella pneumoniae pneumoniae GC s.B linhagem 2. Resultados da curva de crescimento por espectrofotometria não permitiram definir diferentes fases, levando a pensar em uma fase Lag longa. Frascos de cultura demonstraram a formação de biofilme, provocando mudança na cor do herbicida, interferindo na leitura do crescimento. É possível a existência de fase Log, mas não detectável pelo método. Após 5 dias de incubação a 35°C, a diferença média de concentração do S-Metolachlor foi de 14.42 por cento, e em 10 dias, 35.01 por cento. Observou-se o aparecimento de um halo em volta das colônias, o que corrobora a hipótese de degradação microbiana do herbicida.

Antagonism of Serratia marcescens towards Phytophthora parasitica and its effects in promoting the growth of citrus

Phytophthora parasitica causes serious widespread, and difficult-to-control root rots in warmer regions. This oomycete is one of the most important pathogen of citrus. This paper reports the biological control of the pathogen by a strain of Serratia marcescens R-35, isolated from citrus rhizosphere. In greenhouse trials, the bacterium suppressed more than 50 percent of the disease and promoted the plant growth.

Phytophthora parasitica é um oomiceto que causa sérios problemas fitossanitários em diferentes espécies de plantas em regiões tropicais e o controle tem sido difícil. Este patógeno é um dos mais importante à citricultura. Este trabalho relata o controle biológico do patógeno por uma linhagem de Serratia marcescens R-35, isolada da rizosfera de citros. Em condições de casa-de-vegetação, a bactéria reduziu em mais de 50 por cento a incidência da doença, ao mesmo tempo que promoveu o crescimento de plantas.

Scanning electron microscopy of conidia of Trichoderma stromaticum, a biocontrol agent of witches' broom disease of cocoa

Estudos morfológicos de conídios de Trichoderma harzianun, um agente de biocontrole da vassoura-de-bruxa do cacaueiro, foram feitos sob microscopia eletrônica de varredura com emissão de campo. Características da superfície de conídios do fungo mostraram ser rugosas quando observadas em alta magnificação; fato esse impossível de ser visualizado por microscopia ótica. Também foram observados, com freqüência, massas de conídios completamente envolvidos por material mucilaginoso e detalhes de células ramificadas dicotomicamente que formam as pústulas.

Indução da enzima Pirocatecase por Acinetobacter baumanii envolvida na biodegradação do herbicida Diuron / Pyrocathecase induced by Acinetobacter baumanii involved in the biodegradation of the herbiicide Diuron

Uma linhagem de Acinetobacter baumanii, isolada da rizosfera de cana-de-açúcar, cultivada em solos tratados com Diuron foi incubada em diferentes substratos para verificar a presença de catecol 1,2--dioxigenase (pirocatecase). Diferentes indutores foram adicionados ao meio de cultura (glicose, benzoato de sódio, Diuron, dicloroanilina, benzoato de sódio + glicose). As células bacterianas, obtidas pelo processo fermentativo, foram coletadas após centrifugação e rompidas por sonificação para extração da enzima intracelular. A linhagem apresentou alta atividade enzimática quando benzoato de sódio ou benzoato de sódio + glicose ou benzoato de sódio + dicloroanilina foram adicionados ao meio de cultura. A atividade enzimótica acompanhou a produção de biomassa. No estudo da cinética de crescimento, usando Diuron como fonte de carbono e em tres diferentes pH, essa linhagem apresentou melhor resultado quando cultivada em pH6.8. Verificou-se pela avaliação da capacidade de A. baumanii transformar o Diuron, que o metabólito 3,4-dicloroanilina (3,4-DCA) não foi produzido

Production of phenol-oxidases and peroxidases by fungi isolated from irrigated rice

A proposta deste trabalho foi estudar o potencial das linhagens fúngicas, consideradas potenciais degradadoras dos herbicidas quinclorac e propanil, para produção de enzimas ligninolíticas. Oito linhagens fúngicas foram cultivadas em meio de cultura líquido King's B suplementado com 0,05% de Remazol Brilliant Blue R (RBBR) e em meio de cultura líquido contendo farelo de trigo como substrato. Os sistemas enzimáticos avaliados foram: lignina peroxidase, manganês peroxidase e lacases. Os resultados demonstraram padrões diferenciados quanto à produção de enzimas ligninolíticas entre as linhagens, sendo que as maiores atividades enzimáticas estiveram relacionadas à produção de lignina peroxidase. Das oito linhagens, duas (P3SA1F e P11SA2F) apresentaram descoloração do RBBR, sugerindo a possibilidade de sua aplicabilicação em estudos de.

Production of phenol-oxidases and peroxidases by fungi isolated from irrigated rice

The aim of this work was to study the potential of fungus strains considered as prospective degraders for the herbicides quinclorac and propanil, for ligninolytic enzyme production. Eight fungal strains were grown in King's B liquid culture medium supplemented with 0.05% Remazol Brilliant Blue R (RBBR) and in liquid culture medium containing wheat bran as substrate. The enzymatic system assessment were: lignin peroxidase, manganese peroxidase and laccases. Results indicated differential patterns of ligninolytic enzyme production; the highest enzymatic activities were related to the production of lignin peroxidase. Among the strains, two (P3SA1F and P11SA2F) showed RBBR discoloration, suggesting the possibility of their application in bioremediation studies.

A proposta deste trabalho foi estudar o potencial das linhagens fúngicas, consideradas potenciais degradadoras dos herbicidas quinclorac e propanil, para produção de enzimas ligninolíticas. Oito linhagens fúngicas foram cultivadas em meio de cultura líquido King's B suplementado com 0,05% de Remazol Brilliant Blue R (RBBR) e em meio de cultura líquido contendo farelo de trigo como substrato. Os sistemas enzimáticos avaliados foram: lignina peroxidase, manganês peroxidase e lacases. Os resultados demonstraram padrões diferenciados quanto à produção de enzimas ligninolíticas entre as linhagens, sendo que as maiores atividades enzimáticas estiveram relacionadas à produção de lignina peroxidase. Das oito linhagens, duas (P3SA1F e P11SA2F) apresentaram descoloração do RBBR, sugerindo a possibilidade de sua aplicabilicação em estudos de biorremediação

Toxic metabolites from culture filtrate of Fusarium oxysporum and its effects on cucumber cells and plantlets

Resistance of cucumber plantlets to culture filtrate of Fusarium oxysporum is correlated with resistance of single cells from callus. Single cells and platlets of two cultivars of cucumber were incubated with culture filtrates. Rapid cell death ocurred, as assessed by the stain fluorescein diacetate. More cell death ocurred in the cells of the cultivar Aodai than in to cells of the cultivar Caipira, which presented high level of resistance. Maximum toxic activity of culture filtrates was attained after 21-25 days of growth of the fungus.

Carbohydrate-hydrolysing enzyme activity production by solid-state cultures of Trichoderma harzianum strains

Linhagens de Trichoderma harzianum produzem, quando crescidas em meio sólido contendo farelo de trigo como fonte de carbono, atividades enzimáticas que hidrolisam diferentes tipos de carboidratos. As maiores atividades enzimáticas foram de ß-glicosidase, ß-xilosidase e alfa-amilase, enquanto que foram observados níveis muito baixos de atividades de ß-manosidase, alfa-glucuronidase, carboximetil celulase e FPase. As linhagens 4 (CNP 17) e 8 (SS13) foram os melhores produtores de atividade enzimática. O método de extraçäo enzimática na presença de Tween 80, tampäo acetato de sódio, 25mM, pH 5.0 e homogenizaçäo em liquidificador foi menos eficiente que o procedimento que utiliza apenas a soluçäo tampäo descrita acima. O conteúdo de proteína obtido pelo método de extraçäo na ausência de tween 80 foi muito baixo. A atividade de carboximetil celulase foi detectada somente através da extraçäo com Teen 80